STRINGSTRING
Bra002233 protein (Brassica rapa) - STRING interaction network
"Bra002233" - AT5G19400 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002233AT5G19400 (E=5e-290) SMG7 | SMG7 (1071 aa)    
Predicted Functional Partners:
Bra022091
AT5G47010 (E=0.0) UPF1, LBA1, ATUPF1 | LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding / DNA binding / RNA helicase/ hydrolase (1205 aa)
     
  0.980
Bra017513
AT5G47020 (E=0.0) | glycine-rich protein (1566 aa)
     
  0.976
Bra033729
AT5G44200 (E=2e-101) CBP20, ATCBP20 | CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding (264 aa)
       
  0.946
Bra008588
AT5G16850 (E=0.0) ATTERT | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE); telomerase/ telomeric template RNA reverse transcriptase (1165 aa)
     
  0.921
Bra028017
AT1G33980 (E=2e-188) ATUPF3, UPF3 | Smg-4/UPF3 family protein (521 aa)
     
  0.828
Bra036737
AT1G33980 (E=4e-155) ATUPF3, UPF3 | Smg-4/UPF3 family protein (727 aa)
     
  0.816
Bra034457
AT1G33980 (E=5e-179) ATUPF3, UPF3 | Smg-4/UPF3 family protein (476 aa)
     
  0.816
Bra000126
AT2G39260 (E=0.0) | RNA binding / binding / protein binding (1175 aa)
     
 
  0.781
Bra034062
AT5G37150 (E=2e-096) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- tRNA-splicing endonuclease positive effector-related (TAIR-AT5G52090.1); Has 4236 Blast hits to 3442 proteins in 554 species- Archae - 133; Bacteria - 787; Metazoa - 1285; Fungi - 856; Plants - 359; Viruses - 41; Other Eukaryotes - 775 (source- NCBI BLink). (1038 aa)
     
  0.765
Bra024108
AT4G30100 (E=1e-282) | tRNA-splicing endonuclease positive effector-related (950 aa)
     
  0.749
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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