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Bra002244 protein (Brassica rapa) - STRING interaction network
"Bra002244" - AT5G19530 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002244AT5G19530 (E=2e-185) ACL5 | ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase (332 aa)    
Predicted Functional Partners:
Bra040225
AT3G06350 (E=2e-260) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (595 aa)
     
 
  0.881
Bra020756
AT3G06350 (E=5e-264) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (602 aa)
     
 
  0.881
Bra001195
AT3G06350 (E=2e-268) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (597 aa)
     
 
  0.881
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
   
 
  0.880
Bra008931
AT5G11880 (E=7e-254) | diaminopimelate decarboxylase, putative / DAP carboxylase, putative (486 aa)
   
  0.866
Bra006124
AT3G14390 (E=3e-244) | diaminopimelate decarboxylase, putative / DAP carboxylase, putative (493 aa)
   
  0.866
Bra034353
AT2G27450 (E=5e-166) NLP1, ATNLP1, CPA | NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds (297 aa)
   
 
  0.861
Bra021458
AT3G02470 (E=7e-173) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (429 aa)
     
 
  0.791
Bra001046
AT3G02470 (E=8e-179) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (444 aa)
     
 
  0.791
Bra006485
AT5G18930 (E=3e-166) BUD2, SAMDC4 | BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase (346 aa)
     
 
  0.789
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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