STRINGSTRING
Bra002246 protein (Brassica rapa) - STRING interaction network
"Bra002246" - AT5G19560 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002246AT5G19560 (E=6e-208) ATROPGEF10, ROPGEF10 | ROPGEF10 (ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10); Rho guanyl-nucleotide exchange factor (517 aa)    
Predicted Functional Partners:
Bra004945
AT2G45890 (E=9e-213) ATROPGEF4, ROPGEF4 | ROPGEF4 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4); Rho guanyl-nucleotide exchange factor (460 aa)
       
 
0.643
Bra036791
AT3G51560 (E=0.0) | ATP binding / protein binding / transmembrane receptor (1994 aa)
       
 
  0.608
Bra016235
AT1G70110 (E=7e-276) | lectin protein kinase family protein (663 aa)
       
 
  0.416
Bra018025
AT3G48940 (E=8e-057) | remorin family protein (175 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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