STRINGSTRING
Bra002250 protein (Brassica rapa) - STRING interaction network
"Bra002250" - AT5G19620 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002250AT5G19620 (E=0.0) OEP80, ATOEP80, TOC75 | OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA) (735 aa)    
Predicted Functional Partners:
Bra035524
AT5G35930 (E=2e-238) | AMP-dependent synthetase and ligase family protein (1062 aa)
     
 
  0.928
Bra038249
AT3G20000 (E=5e-152) TOM40 | TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel (310 aa)
     
  0.716
Bra035826
AT3G20000 (E=8e-151) TOM40 | TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel (309 aa)
     
  0.716
Bra010979
AT1G25054 (E=2e-142) | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (323 aa)
 
   
  0.668
Bra029566
AT4G21220 (E=4e-118) | bacterial transferase hexapeptide repeat-containing protein (297 aa)
 
   
  0.662
Bra020036
AT5G19370 (E=2e-062) | rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (301 aa)
   
 
  0.662
Bra030666
AT1G06950 (E=0.0) ATTIC110, TIC110 | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) (1013 aa)
     
 
  0.659
Bra015538
AT1G06950 (E=0.0) ATTIC110, TIC110 | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) (1003 aa)
     
 
  0.659
Bra010323
AT4G29540 (E=4e-143) | bacterial transferase hexapeptide repeat-containing protein (335 aa)
 
   
  0.646
Bra039482
AT5G35220 (E=3e-261) EGY1 | EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1); metalloendopeptidase (563 aa)
 
   
  0.645
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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