STRINGSTRING
Bra002258 protein (Brassica rapa) - STRING interaction network
"Bra002258" - AT5G19750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002258AT5G19750 (E=8e-107) | peroxisomal membrane 22 kDa family protein (278 aa)    
Predicted Functional Partners:
Bra029114
AT5G52540 (E=1e-161) | unknown protein (465 aa)
     
   
  0.455
Bra022598
AT5G52540 (E=2e-164) | unknown protein (443 aa)
           
  0.410
Bra009721
AT5G24000 (E=8e-177) | unknown protein (446 aa)
           
  0.410
Bra017151
AT2G37890 (E=2e-143) | mitochondrial substrate carrier family protein (345 aa)
           
  0.408
Bra000026
AT2G37890 (E=1e-146) | mitochondrial substrate carrier family protein (340 aa)
           
  0.408
Bra023031
AT2G35800 (E=6e-303) | mitochondrial substrate carrier family protein (774 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]