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Bra002259 protein (Brassica rapa) - STRING interaction network
"Bra002259" - AT5G19760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002259AT5G19760 (E=2e-085) | dicarboxylate/tricarboxylate carrier (DTC) (259 aa)    
Predicted Functional Partners:
Bra040448
AT3G63490 (E=9e-143) | ribosomal protein L1 family protein (339 aa)
     
    0.667
Bra004722
AT2G42710 (E=2e-119) | ribosomal protein L1 family protein (388 aa)
     
    0.667
Bra037609
AT3G44890 (E=1e-074) RPL9 | RPL9 (RIBOSOMAL PROTEIN L9); structural constituent of ribosome (196 aa)
     
    0.655
Bra022625
AT5G53070 (E=3e-105) | ribosomal protein L9 family protein (254 aa)
     
    0.655
Bra003084
AT5G53070 (E=6e-103) | ribosomal protein L9 family protein (220 aa)
     
    0.655
Bra015656
AT1G77760 (E=1e-253) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase (890 aa)
     
   
  0.592
Bra008333
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (906 aa)
     
   
  0.592
Bra003670
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (910 aa)
     
   
  0.592
Bra020089
AT5G20180 (E=2e-037) | ribosomal protein L36 family protein (104 aa)
         
  0.556
Bra006546
AT5G20180 (E=5e-047) | ribosomal protein L36 family protein (103 aa)
         
  0.556
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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