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Bra002265 protein (Brassica rapa) - STRING interaction network
"Bra002265" - AT5G19855 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002265AT5G19855 (E=1e-049) | unknown protein (216 aa)    
Predicted Functional Partners:
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
       
      0.914
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
       
      0.914
Bra041116
ATCG00490 (E=1e-236) RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. (481 aa)
     
 
  0.789
Bra028087
ATCG00490 (E=4e-277) RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. (479 aa)
     
 
  0.789
Bra037913
AT4G10340 (E=2e-136) LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding (281 aa)
       
      0.612
Bra000708
AT4G10340 (E=1e-133) LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding (280 aa)
       
      0.612
Bra029007
AT5G54770 (E=5e-174) THI1, TZ, THI4 | THI1; protein homodimerization (351 aa)
     
      0.582
Bra022742
AT5G54770 (E=1e-173) THI1, TZ, THI4 | THI1; protein homodimerization (349 aa)
     
      0.582
Bra002957
AT5G54770 (E=8e-176) THI1, TZ, THI4 | THI1; protein homodimerization (352 aa)
     
      0.582
Bra029488
AT4G04330 (E=1e-078) | unknown protein (174 aa)
     
   
  0.513
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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