STRINGSTRING
Bra002266 protein (Brassica rapa) - STRING interaction network
"Bra002266" - AT5G19860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002266AT5G19860 (E=7e-058) | unknown protein (182 aa)    
Predicted Functional Partners:
Bra002280
AT5G20190 (E=9e-095) | binding (284 aa)
           
  0.505
Bra013392
AT4G19390 (E=3e-080) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP022348 (InterPro-IPR016804), Uncharacterised protein family UPF0114 (InterPro-IPR005134); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G13720.1); Has 553 Blast hits to 553 proteins in 219 species- Archae - 18; Bacteria - 407; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 74 (so [...] (256 aa)
           
  0.503
Bra010381
AT4G28240 (E=2e-037) | wound-responsive protein-related (86 aa)
           
  0.473
Bra026273
AT4G28240 (E=5e-032) | wound-responsive protein-related (86 aa)
           
  0.443
Bra024216
AT4G28240 (E=1e-014) | wound-responsive protein-related (89 aa)
           
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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