STRINGSTRING
Bra002273 protein (Brassica rapa) - STRING interaction network
"Bra002273" - AT5G19910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002273AT5G19910 (E=9e-081) | SOH1 family protein (198 aa)    
Predicted Functional Partners:
Bra028845
AT5G03500 (E=6e-063) | transcription coactivator (205 aa)
     
  0.983
Bra009544
AT5G03500 (E=2e-072) | transcription coactivator (168 aa)
     
  0.983
Bra031277
AT3G21350 (E=6e-109) | RNA polymerase transcriptional regulation mediator-related (255 aa)
     
  0.981
Bra024622
AT3G13900 (E=3e-139) | ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (638 aa)
     
  0.981
Bra037748
AT5G63610 (E=1e-234) HEN3, CDKE;1, ATCDK8 | CDKE;1 (CYCLIN-DEPENDENT KINASE E;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (468 aa)
       
  0.981
Bra012447
AT1G26665 (E=5e-080) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- RNA polymerase II mediator complex protein-related (TAIR-AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (513 aa)
     
  0.980
Bra040401
AT3G04740 (E=0.0) SWP, MED14, ATMED14 | SWP (STRUWWELPETER) (1634 aa)
       
  0.979
Bra024698
AT1G26665 (E=6e-040) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- RNA polymerase II mediator complex protein-related (TAIR-AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (162 aa)
     
  0.979
Bra029517
AT4G04780 (E=1e-040) MED21 | MED21 (MEDIATOR 21) (148 aa)
     
  0.969
Bra018507
AT4G04780 (E=3e-031) MED21 | MED21 (MEDIATOR 21) (103 aa)
     
  0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]