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Bra002278 protein (Brassica rapa) - STRING interaction network
"Bra002278" - AT5G19980 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002278AT5G19980 (E=4e-147) | integral membrane family protein (344 aa)    
Predicted Functional Partners:
Bra035708
AT2G28315 (E=6e-149) | LOCATED IN- membrane; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF250 (InterPro-IPR004853); BEST Arabidopsis thaliana protein match is- transporter-related (TAIR-AT1G06890.2); Has 1852 Blast hits to 1847 proteins in 207 species- Archae - 0; Bacteria - 58; Metazoa - 582; Fungi - 250; Plants - 685; Viruses - 0; Other Eukaryotes - 277 (source- NCBI BLink). (601 aa)
           
  0.522
Bra037803
AT5G65000 (E=1e-148) | nucleotide-sugar transporter family protein (325 aa)
     
   
  0.491
Bra037728
AT2G43240 (E=8e-210) | nucleotide-sugar transmembrane transporter/ sugar-hydrogen symporter (410 aa)
     
   
  0.491
Bra025466
AT5G41760 (E=3e-165) | nucleotide-sugar transporter family protein (324 aa)
     
   
  0.491
Bra025132
AT3G59360 (E=5e-021) UTR6, ATUTR6 | UTR6 (UDP-GALACTOSE TRANSPORTER 6); nucleotide-sugar transmembrane transporter/ sugar-hydrogen symporter (71 aa)
     
   
  0.491
Bra024344
AT5G65000 (E=3e-143) | nucleotide-sugar transporter family protein (650 aa)
     
   
  0.491
Bra017709
AT4G35335 (E=8e-181) | nucleotide-sugar transmembrane transporter/ sugar-hydrogen symporter (336 aa)
     
   
  0.491
Bra014541
AT3G59360 (E=2e-197) UTR6, ATUTR6 | UTR6 (UDP-GALACTOSE TRANSPORTER 6); nucleotide-sugar transmembrane transporter/ sugar-hydrogen symporter (397 aa)
     
   
  0.491
Bra011607
AT4G35335 (E=9e-178) | nucleotide-sugar transmembrane transporter/ sugar-hydrogen symporter (346 aa)
     
   
  0.491
Bra010536
AT4G35335 (E=6e-182) | nucleotide-sugar transmembrane transporter/ sugar-hydrogen symporter (356 aa)
     
   
  0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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