STRINGSTRING
Bra002291 protein (Brassica rapa) - STRING interaction network
"Bra002291" - AT5G20300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002291AT5G20300 (E=0.0) | chloroplast outer membrane protein, putative (783 aa)    
Predicted Functional Partners:
Bra039947
AT3G22380 (E=0.0) TIC | TIC (TIME FOR COFFEE) (1561 aa)
           
  0.450
Bra030666
AT1G06950 (E=0.0) ATTIC110, TIC110 | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) (1013 aa)
           
  0.406
Bra015538
AT1G06950 (E=0.0) ATTIC110, TIC110 | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) (1003 aa)
           
  0.406
Bra023830
AT3G22380 (E=0.0) TIC | TIC (TIME FOR COFFEE) (1525 aa)
           
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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