STRINGSTRING
Bra002293 protein (Brassica rapa) - STRING interaction network
"Bra002293" - AT5G20320 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002293AT5G20320 (E=0.0) DCL4, ATDCL4 | DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III (1641 aa)    
Predicted Functional Partners:
Bra003999
AT1G69440 (E=0.0) AGO7, ZIP | AGO7 (ARGONAUTE7); nucleic acid binding (981 aa)
     
  0.993
Bra032254
AT1G48410 (E=0.0) AGO1 | AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding (1111 aa)
     
  0.992
AGO4
AT2G27040 (E=0.0) AGO4, OCP11 | AGO4 (ARGONAUTE 4); nucleic acid binding (922 aa)
     
  0.992
Bra023172
AT1G31280 (E=0.0) AGO2 | AGO2 (argonaute 2); nucleic acid binding (1037 aa)
     
  0.992
Bra014136
AT1G48410 (E=0.0) AGO1 | AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding (1079 aa)
     
  0.991
Bra040815
AT1G31280 (E=0.0) AGO2 | AGO2 (argonaute 2); nucleic acid binding (1009 aa)
     
  0.991
Bra011993
AT2G27880 (E=0.0) AGO5 | AGO5 (ARGONAUTE 5); nucleic acid binding (966 aa)
     
  0.991
Bra022918
AT2G32940 (E=0.0) AGO6 | AGO6 (ARGONAUTE 6); nucleic acid binding (867 aa)
     
  0.991
Bra033698
AT5G43810 (E=0.0) ZLL, PNH, AGO10 | ZLL (ZWILLE); translation initiation factor (974 aa)
     
  0.990
Bra005981
AT2G27040 (E=4e-044) AGO4, OCP11 | AGO4 (ARGONAUTE 4); nucleic acid binding (741 aa)
     
  0.990
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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