STRINGSTRING
Bra002314 protein (Brassica rapa) - STRING interaction network
"Bra002314" - AT5G20600 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002314AT5G20600 (E=5e-179) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- preribosome, small subunit precursor; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nucleolar, Nop52 (InterPro-IPR010301); Has 444 Blast hits to 431 proteins in 151 species- Archae - 0; Bacteria - 10; Metazoa - 196; Fungi - 114; Plants - 27; Viruses - 0; Other Eukaryotes - 97 (source- NCBI BLink). (517 aa)    
Predicted Functional Partners:
Bra004892
AT2G40360 (E=0.0) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (1259 aa)
     
 
  0.998
Bra000371
AT2G40360 (E=0.0) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (738 aa)
     
 
  0.998
Bra040743
AT4G16630 (E=2e-266) | DEAD/DEAH box helicase, putative (RH28) (874 aa)
     
 
  0.996
Bra038492
AT4G16630 (E=5e-153) | DEAD/DEAH box helicase, putative (RH28) (908 aa)
     
 
  0.996
Bra039628
AT2G18220 (E=4e-280) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0120 (InterPro-IPR005343); BEST Arabidopsis thaliana protein match is- RBL (REBELOTE) (TAIR-AT3G55510.1); Has 4846 Blast hits to 3236 proteins in 249 species- Archae - 2; Bacteria - 127; Metazoa - 2049; Fungi - 594; Plants - 200; Viruses - 69; Other Eukaryotes - 1805 (source- NCBI BLink). (761 aa)
     
 
  0.996
Bra014738
AT3G55510 (E=3e-056) RBL | RBL (REBELOTE) (377 aa)
     
 
  0.996
Bra007171
AT3G55510 (E=3e-211) RBL | RBL (REBELOTE) (628 aa)
     
 
  0.996
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
     
 
  0.996
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
     
 
  0.996
Bra001232
AT3G07050 (E=2e-216) | GTP-binding family protein (584 aa)
     
 
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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