STRINGSTRING
Bra002315 protein (Brassica rapa) - STRING interaction network
"Bra002315" - AT5G20610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002315AT5G20610 (E=2e-265) | unknown protein (1184 aa)    
Predicted Functional Partners:
Bra034308
AT2G26570 (E=6e-192) | unknown protein (647 aa)
           
  0.497
Bra028956
AT5G55860 (E=2e-212) | unknown protein (644 aa)
           
  0.497
Bra025156
AT3G25690 (E=4e-279) CHUP1 | CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) (977 aa)
           
  0.449
Bra015866
AT1G75100 (E=6e-078) JAC1 | JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein binding (638 aa)
           
  0.448
Bra004170
AT1G66480 (E=8e-090) PMI2 | PMI2 (plastid movement impaired 2) (223 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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