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Bra002328 protein (Brassica rapa) - STRING interaction network
"Bra002328" - AT5G20740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002328AT5G20740 (E=1e-080) | invertase/pectin methylesterase inhibitor family protein (203 aa)    
Predicted Functional Partners:
Bra029776
AT3G09580 (E=4e-193) | amine oxidase family protein (473 aa)
           
  0.502
Bra001303
AT3G09590 (E=5e-073) | pathogenesis-related protein, putative (192 aa)
           
  0.502
Bra037365
AT4G01280 (E=2e-084) | myb family transcription factor (339 aa)
           
  0.473
Bra031144
AT2G20870 (E=1e-040) | cell wall protein precursor, putative (147 aa)
     
   
  0.436
Bra033633
AT4G39670 (E=1e-102) | glycolipid binding / glycolipid transporter (227 aa)
           
  0.406
Bra019377
AT4G22490 (E=1e-042) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (123 aa)
           
  0.406
Bra010670
AT4G39670 (E=5e-103) | glycolipid binding / glycolipid transporter (226 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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