STRINGSTRING
Bra002329 protein (Brassica rapa) - STRING interaction network
"Bra002329" - AT5G20790 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002329AT5G20790 (E=4e-054) | unknown protein (187 aa)    
Predicted Functional Partners:
Bra025953
AT1G17710 (E=2e-140) | phosphatase (281 aa)
     
   
  0.551
Bra031056
AT1G18910 (E=0.0) | protein binding / zinc ion binding (1248 aa)
           
  0.540
Bra015894
AT1G74770 (E=0.0) | protein binding / zinc ion binding (1246 aa)
           
  0.456
Bra016025
AT1G73010 (E=7e-138) | phosphatase (291 aa)
     
   
  0.420
Bra008066
AT1G73010 (E=2e-139) | phosphatase (292 aa)
     
   
  0.420
Bra039863
AT1G30560 (E=1e-279) | transporter, putative (510 aa)
           
  0.406
Bra031002
AT1G17710 (E=1e-134) | phosphatase (286 aa)
     
   
  0.404
Bra016591
AT1G17710 (E=1e-138) | phosphatase (278 aa)
     
   
  0.404
Bra011120
AT4G29530 (E=1e-116) | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase family (247 aa)
     
   
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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