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Bra002331 protein (Brassica rapa) - STRING interaction network
"Bra002331" - AT5G20820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002331AT5G20820 (E=5e-062) | auxin-responsive protein-related (127 aa)    
Predicted Functional Partners:
Bra008999
AT5G10990 (E=2e-069) | auxin-responsive family protein (148 aa)
           
  0.418
Bra026717
AT1G16510 (E=2e-055) | auxin-responsive family protein (146 aa)
           
  0.414
Bra026044
AT1G16510 (E=3e-058) | auxin-responsive family protein (145 aa)
           
  0.414
Bra015832
AT1G75580 (E=6e-044) | auxin-responsive protein, putative (108 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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