STRINGSTRING
Bra002338 protein (Brassica rapa) - STRING interaction network
"Bra002338" - AT5G20900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002338AT5G20900 (E=2e-040) JAZ12, TIFY3B | JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) (201 aa)    
Predicted Functional Partners:
Bra010178
AT1G32640 (E=5e-263) ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | MYC2; DNA binding / transcription activator/ transcription factor (600 aa)
     
  0.999
Bra024998
AT5G46760 (E=2e-213) | basic helix-loop-helix (bHLH) family protein (580 aa)
     
  0.991
Bra023399
AT5G13220 (E=3e-074) JAZ10, TIFY9, JAS1 | JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) (184 aa)
     
  0.990
Bra032362
AT1G30135 (E=1e-041) JAZ8, TIFY5A | JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) (133 aa)
       
 
  0.988
Bra010794
AT1G30135 (E=1e-048) JAZ8, TIFY5A | JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) (130 aa)
       
 
  0.988
Bra025977
AT1G17380 (E=1e-081) JAZ5, TIFY11A | JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) (256 aa)
       
 
  0.987
Bra013263
AT4G17880 (E=5e-096) | basic helix-loop-helix (bHLH) family protein (271 aa)
     
  0.987
Bra008846
AT5G13220 (E=9e-081) JAZ10, TIFY9, JAS1 | JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) (196 aa)
     
0.983
Bra015880
AT1G74950 (E=4e-075) JAZ2, TIFY10B | TIFY10B (245 aa)
     
0.982
Bra008172
AT1G19180 (E=8e-062) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (240 aa)
     
0.982
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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