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Bra002348 protein (Brassica rapa) - STRING interaction network
"Bra002348" - AT5G20970 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002348AT5G20970 (E=9e-057) | heat shock family protein (261 aa)    
Predicted Functional Partners:
Bra027370
AT3G14150 (E=2e-166) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (1001 aa)
   
 
  0.842
Bra020463
AT5G57130 (E=1e-289) | protein binding (866 aa)
   
 
  0.804
Bra033427
AT3G52490 (E=0.0) | heat shock protein-related (796 aa)
   
 
  0.754
Bra032044
AT2G25140 (E=1e-159) HSP98.7, CLPB-M, CLPB4 | CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (794 aa)
   
 
  0.754
Bra031556
AT1G07200 (E=0.0) | ATP-dependent Clp protease ClpB protein-related (951 aa)
   
 
  0.754
Bra029922
AT3G48870 (E=0.0) ATCLPC, ATHSP93-III, HSP93-III | HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding (928 aa)
   
 
  0.754
Bra029193
AT5G51070 (E=0.0) ERD1, CLPD | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (943 aa)
   
 
  0.754
Bra024084
AT4G30350 (E=3e-165) | heat shock protein-related (789 aa)
   
 
  0.754
Bra023518
AT5G15450 (E=0.0) APG6, CLPB3, CLPB-P | CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (963 aa)
   
 
  0.754
Bra022751
AT5G50920 (E=0.0) CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC1; ATP binding / ATP-dependent peptidase/ ATPase (929 aa)
   
 
  0.754
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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