STRINGSTRING
Bra002351 protein (Brassica rapa) - STRING interaction network
"Bra002351" - AT5G21050 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002351AT5G21050 (E=1e-154) | LOCATED IN- chloroplast; EXPRESSED IN- 14 plant structures; EXPRESSED DURING- 8 growth stages; CONTAINS InterPro DOMAIN/s- Hyccin (InterPro-IPR018619); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G64090.1); Has 170 Blast hits to 170 proteins in 49 species- Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (347 aa)    
Predicted Functional Partners:
Bra019449
AT4G28600 (E=1e-061) NPGR2 | NPGR2 (no pollen germination related 2); calmodulin binding (300 aa)
       
      0.613
Bra014207
AT2G43040 (E=3e-037) NPG1 | NPG1 (no pollen germination 1); calmodulin binding (138 aa)
       
      0.613
Bra011041
AT4G28600 (E=0.0) NPGR2 | NPGR2 (no pollen germination related 2); calmodulin binding (737 aa)
       
      0.613
Bra010936
AT1G27460 (E=4e-308) NPGR1 | NPGR1 (NO POLLEN GERMINATION RELATED 1); calmodulin binding (703 aa)
       
      0.613
Bra010358
AT4G28600 (E=7e-290) NPGR2 | NPGR2 (no pollen germination related 2); calmodulin binding (698 aa)
       
      0.613
Bra004738
AT2G43040 (E=0.0) NPG1 | NPG1 (no pollen germination 1); calmodulin binding (707 aa)
       
      0.613
Bra000286
AT2G43040 (E=1e-284) NPG1 | NPG1 (no pollen germination 1); calmodulin binding (687 aa)
       
      0.613
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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