STRINGSTRING
Bra002359 protein (Brassica rapa) - STRING interaction network
"Bra002359" - AT5G21140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002359AT5G21140 (E=1e-126) emb1379 | emb1379 (embryo defective 1379) (316 aa)    
Predicted Functional Partners:
Bra030454
AT1G51130 (E=7e-161) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Nse4 (InterPro-IPR014854); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G20760.1); Has 200 Blast hits to 198 proteins in 89 species- Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 88; Plants - 37; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink). (387 aa)
     
  0.973
Bra018895
AT1G51130 (E=6e-159) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Nse4 (InterPro-IPR014854); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G20760.1); Has 200 Blast hits to 198 proteins in 89 species- Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 88; Plants - 37; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink). (397 aa)
     
  0.973
Bra006333
AT5G15920 (E=0.0) | structural maintenance of chromosomes (SMC) family protein (MSS2) (1049 aa)
     
  0.967
Bra028687
AT5G07660 (E=0.0) | structural maintenance of chromosomes (SMC) family protein (1033 aa)
     
  0.966
Bra012956
AT5G61460 (E=0.0) MIM, ATRAD18 | MIM (hypersensitive to MMS, irradiation and MMC); ATP binding (1053 aa)
     
  0.966
Bra036757
AT1G34770 (E=1e-111) | MAGE-8 antigen-related (236 aa)
     
  0.962
Bra027275
AT3G15150 (E=1e-079) | zinc ion binding (289 aa)
       
  0.958
Bra034328
AT2G27170 (E=0.0) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1243 aa)
     
  0.777
Bra000522
AT2G27170 (E=1e-200) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1097 aa)
     
  0.773
Bra018145
AT3G47460 (E=0.0) ATSMC2 | ATSMC2; transporter (1175 aa)
     
  0.744
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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