STRINGSTRING
Bra002375 protein (Brassica rapa) - STRING interaction network
"Bra002375" - AT5G21940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002375AT5G21940 (E=1e-072) | unknown protein (249 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.992
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
     
  0.961
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
     
  0.961
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
   
    0.940
Bra003809
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1380 aa)
   
      0.909
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
     
  0.903
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
 
  0.892
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
 
  0.892
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.874
Bra012038
AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (854 aa)
     
  0.871
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (16%) [HD]