STRINGSTRING
Bra002381 protein (Brassica rapa) - STRING interaction network
"Bra002381" - AT5G21280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002381AT5G21280 (E=5e-066) | hydroxyproline-rich glycoprotein family protein (292 aa)    
Predicted Functional Partners:
Bra019447
AT3G43520 (E=5e-039) | unknown protein (219 aa)
           
  0.526
Bra025787
AT1G19990 (E=7e-031) | unknown protein (273 aa)
           
  0.519
Bra027988
AT1G33265 (E=2e-019) | unknown protein (119 aa)
           
  0.477
Bra037967
AT1G54150 (E=1e-154) | zinc finger (C3HC4-type RING finger) family protein (391 aa)
           
  0.472
Bra030900
AT1G54150 (E=2e-156) | zinc finger (C3HC4-type RING finger) family protein (380 aa)
           
  0.472
Bra018873
AT1G50740 (E=2e-048) | unknown protein (123 aa)
           
  0.455
Bra040406
AT3G04790 (E=2e-127) | ribose 5-phosphate isomerase-related (276 aa)
           
  0.406
Bra040120
AT3G04790 (E=8e-114) | ribose 5-phosphate isomerase-related (275 aa)
           
  0.406
Bra004214
AT1G67280 (E=3e-172) | lactoylglutathione lyase, putative / glyoxalase I, putative (341 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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