STRINGSTRING
Bra002384 protein (Brassica rapa) - STRING interaction network
"Bra002384" - AT5G22030 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002384AT5G22030 (E=0.0) UBP8 | UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8); ubiquitin thiolesterase/ ubiquitin-specific protease (875 aa)    
Predicted Functional Partners:
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
       
  0.951
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
  0.803
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
  0.803
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
  0.803
Bra011230
AT4G30890 (E=5e-204) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (590 aa)
     
0.630
Bra010268
AT4G30890 (E=3e-214) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (569 aa)
     
0.630
Bra024037
AT4G30890 (E=5e-172) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (400 aa)
     
0.629
Bra020761
AT3G06290 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro-IPR005062); BEST Arabidopsis thaliana protein match is- SAC3/GANP family protein (TAIR-AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species- Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source- NCBI BLink). (1647 aa)
     
      0.628
Bra003181
AT3G54380 (E=1e-155) | SAC3/GANP family protein (385 aa)
     
      0.628
Bra001190
AT3G06290 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro-IPR005062); BEST Arabidopsis thaliana protein match is- SAC3/GANP family protein (TAIR-AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species- Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source- NCBI BLink). (1640 aa)
     
      0.628
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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