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Bra002387 protein (Brassica rapa) - STRING interaction network
"Bra002387" - AT5G22080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002387AT5G22080 (E=9e-109) | DNAJ heat shock N-terminal domain-containing protein (246 aa)    
Predicted Functional Partners:
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
 
    0.897
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
 
    0.869
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
     
    0.849
Bra039377
AT3G13200 (E=6e-069) EMB2769 | EMB2769 (EMBRYO DEFECTIVE 2769) (231 aa)
     
 
    0.639
Bra034698
AT3G13200 (E=5e-036) EMB2769 | EMB2769 (EMBRYO DEFECTIVE 2769) (231 aa)
     
 
    0.639
Bra016978
AT2G40650 (E=5e-101) | pre-mRNA splicing factor PRP38 family protein (394 aa)
     
 
    0.638
Bra000198
AT2G40650 (E=5e-106) | pre-mRNA splicing factor PRP38 family protein (352 aa)
     
 
    0.638
Bra033217
AT1G02140 (E=6e-050) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding (102 aa)
     
 
  0.634
Bra032668
AT1G02140 (E=4e-066) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding (266 aa)
     
 
  0.634
Bra028740
AT5G06160 (E=5e-217) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding (506 aa)
     
 
    0.621
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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