STRINGSTRING
Bra002388 protein (Brassica rapa) - STRING interaction network
"Bra002388" - AT5G22090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002388AT5G22090 (E=1e-168) | unknown protein (458 aa)    
Predicted Functional Partners:
Bra040021
AT3G07660 (E=0.0) | unknown protein (822 aa)
           
  0.574
Bra029667
AT3G07660 (E=0.0) | unknown protein (826 aa)
           
  0.542
Bra025111
AT5G44720 (E=2e-164) | molybdenum cofactor sulfurase family protein (308 aa)
           
  0.537
Bra037892
AT1G30910 (E=2e-159) | molybdenum cofactor sulfurase family protein (313 aa)
           
  0.507
Bra033616
AT4G39410 (E=8e-041) WRKY13, ATWRKY13 | WRKY13; transcription factor (292 aa)
           
  0.456
Bra011861
AT4G39410 (E=3e-104) WRKY13, ATWRKY13 | WRKY13; transcription factor (298 aa)
           
  0.456
Bra018726
AT1G48420 (E=8e-106) D-CDES | D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic (319 aa)
           
  0.441
Bra023362
AT5G12080 (E=7e-309) MSL10 | MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel (728 aa)
           
  0.420
Bra027568
AT5G44720 (E=1e-141) | molybdenum cofactor sulfurase family protein (308 aa)
           
  0.420
Bra027567
AT5G44720 (E=3e-154) | molybdenum cofactor sulfurase family protein (309 aa)
           
  0.420
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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