STRINGSTRING
Bra002404 protein (Brassica rapa) - STRING interaction network
"Bra002404" - AT5G22310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002404AT5G22310 (E=1e-147) | unknown protein (484 aa)    
Predicted Functional Partners:
Bra029613
AT3G06980 (E=1e-260) | DEAD/DEAH box helicase, putative (744 aa)
       
      0.908
Bra026962
AT1G12650 (E=1e-045) | unknown protein (232 aa)
       
      0.908
Bra026961
AT1G12650 (E=5e-016) | unknown protein (56 aa)
       
      0.903
Bra040708
AT3G02065 (E=8e-221) | DEAD/DEAH box helicase family protein (502 aa)
       
      0.519
Bra040699
AT3G01540 (E=2e-242) DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase (609 aa)
       
      0.519
Bra038370
AT4G09730 (E=5e-076) | DEAD/DEAH box helicase, putative (361 aa)
       
      0.519
Bra036582
AT5G26742 (E=0.0) emb1138 | emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding (743 aa)
       
      0.519
Bra035903
AT5G62190 (E=2e-177) PRH75 | PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding (633 aa)
       
      0.519
Bra035857
AT5G63120 (E=2e-278) | ethylene-responsive DEAD box RNA helicase, putative (RH30) (591 aa)
       
      0.519
Bra035518
AT1G31970 (E=3e-229) STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (536 aa)
       
      0.519
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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