STRINGSTRING
Bra002407 protein (Brassica rapa) - STRING interaction network
"Bra002407" - AT5G22350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002407AT5G22350 (E=1e-195) ELM1 | ELM1 (ELONGATED MITOCHONDRIA 1) (470 aa)    
Predicted Functional Partners:
Bra036991
AT4G33650 (E=0.0) ADL2, DRP3A | DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding (807 aa)
           
  0.562
Bra011458
AT4G33650 (E=0.0) ADL2, DRP3A | DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding (807 aa)
           
  0.562
Bra007301
AT3G57090 (E=1e-061) BIGYIN, FIS1A | BIGYIN; binding (170 aa)
           
  0.540
Bra002472
AT5G60550 (E=5e-196) GRIK2, ATSNAK1 | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2); kinase (413 aa)
           
  0.499
Bra028245
AT5G39440 (E=5e-196) SnRK1.3 | SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (494 aa)
           
  0.406
Bra025313
AT3G27930 (E=3e-193) | unknown protein (424 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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