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Bra002412 protein (Brassica rapa) - STRING interaction network
"Bra002412" - AT5G22450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002412AT5G22450 (E=0.0) | unknown protein (1146 aa)    
Predicted Functional Partners:
Bra034892
AT1G77230 (E=6e-036) | tetratricopeptide repeat (TPR)-containing protein (201 aa)
           
  0.541
Bra040902
AT5G21100 (E=3e-271) | L-ascorbate oxidase, putative (572 aa)
           
  0.525
Bra002355
AT5G21100 (E=1e-267) | L-ascorbate oxidase, putative (573 aa)
           
  0.525
Bra014938
AT3G23325 (E=3e-046) | splicing factor, putative (87 aa)
           
  0.495
Bra021090
AT1G65960 (E=4e-259) GAD2 | GAD2 (GLUTAMATE DECARBOXYLASE 2); calmodulin binding / glutamate decarboxylase (494 aa)
           
  0.410
Bra021455
AT2G48140 (E=4e-053) EDA4 | EDA4 (embryo sac development arrest 4); lipid binding (192 aa)
           
  0.407
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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