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Bra002415 protein (Brassica rapa) - STRING interaction network
"Bra002415" - AT5G37340 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002415AT5G37340 (E=3e-145) | zinc finger (ZPR1-type) family protein (484 aa)    
Predicted Functional Partners:
Bra030707
AT5G60390 (E=1e-255) | elongation factor 1-alpha / EF-1-alpha ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (590 aa)
     
 
  0.902
Bra031605
AT5G60390 (E=1e-200) | elongation factor 1-alpha / EF-1-alpha (427 aa)
       
 
  0.902
Bra002483
AT5G60390 (E=2e-254) | elongation factor 1-alpha / EF-1-alpha ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (449 aa)
       
 
  0.902
Bra031601
AT5G60390 (E=2e-109) | elongation factor 1-alpha / EF-1-alpha (198 aa)
       
 
  0.902
Bra020253
AT5G60390 (E=4e-254) | elongation factor 1-alpha / EF-1-alpha ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (449 aa)
       
 
  0.902
Bra020251
AT5G60390 (E=8e-160) | elongation factor 1-alpha / EF-1-alpha (412 aa)
       
 
  0.902
Bra018669.1-P
AT5G60390 (E=2e-254) | elongation factor 1-alpha / EF-1-alpha (449 aa)
       
 
  0.902
Bra018242
AT5G60390 (E=8e-254) | elongation factor 1-alpha / EF-1-alpha ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (449 aa)
       
 
  0.902
Bra006661
AT5G60390 (E=1e-251) | elongation factor 1-alpha / EF-1-alpha ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (449 aa)
       
 
  0.902
Bra002483.1-P
AT5G60390 (E=2e-254) | elongation factor 1-alpha / EF-1-alpha (449 aa)
       
 
  0.902
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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