STRINGSTRING
Bra002421 protein (Brassica rapa) - STRING interaction network
"Bra002421" - AT5G22570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002421AT5G22570 (E=2e-098) WRKY38, ATWRKY38 | WRKY38; transcription factor (288 aa)    
Predicted Functional Partners:
HD1
AT4G38130 (E=8e-284) HD1, HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (502 aa)
       
 
  0.654
Bra035148
AT1G80840 (E=5e-133) WRKY40, ATWRKY40 | WRKY40; transcription factor (300 aa)
       
 
  0.548
Bra008435
AT1G80840 (E=1e-102) WRKY40, ATWRKY40 | WRKY40; transcription factor (290 aa)
       
 
  0.548
Bra003588
AT1G80840 (E=6e-135) WRKY40, ATWRKY40 | WRKY40; transcription factor (297 aa)
       
 
  0.493
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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