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Bra002423 protein (Brassica rapa) - STRING interaction network
"Bra002423" - AT5G22630 in Brassica rapa
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002423AT5G22630 (E=8e-221) ADT5 | ADT5 (arogenate dehydratase 5); arogenate dehydratase/ prephenate dehydratase ; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (432 aa)    
Predicted Functional Partners:
Bra035662
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (899 aa)
   
 
  0.968
Bra011921
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (937 aa)
   
 
  0.968
Bra028622
AT5G09680 (E=9e-074) | cytochrome b5 domain-containing protein (208 aa)
       
      0.906
Bra009398
AT5G09730 (E=2e-198) BXL3, ATBXL3, XYL3, ATBX3, BX3 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds (637 aa)
     
      0.903
Bra007101
AT3G54826 (E=1e-053) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Zinc finger, Zim17-type (InterPro-IPR007853); Has 284 Blast hits to 284 proteins in 134 species- Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 79; Plants - 58; Viruses - 0; Other Eukaryotes - 47 (source- NCBI BLink). (196 aa)
       
      0.898
Bra003197
AT3G54826 (E=5e-070) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Zinc finger, Zim17-type (InterPro-IPR007853); Has 284 Blast hits to 284 proteins in 134 species- Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 79; Plants - 58; Viruses - 0; Other Eukaryotes - 47 (source- NCBI BLink). (188 aa)
       
      0.898
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
   
 
  0.846
Bra036217
AT3G29200 (E=6e-128) CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase (329 aa)
     
  0.837
Bra033090
AT3G29200 (E=1e-027) CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase (184 aa)
     
  0.837
Bra028560
AT5G10870 (E=2e-110) ATCM2 | ATCM2 (chorismate mutase 2); chorismate mutase (259 aa)
     
  0.837
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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