STRINGSTRING
Bra002424 protein (Brassica rapa) - STRING interaction network
"Bra002424" - AT5G22640 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002424AT5G22640 (E=0.0) emb1211 | emb1211 (embryo defective 1211) (858 aa)    
Predicted Functional Partners:
Bra005678
AT5G01590 (E=5e-269) | unknown protein (519 aa)
     
   
  0.615
Bra015367
AT1G04940 (E=2e-133) TIC20 | TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20) (276 aa)
           
  0.473
Bra030666
AT1G06950 (E=0.0) ATTIC110, TIC110 | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) (1013 aa)
     
   
  0.465
Bra015538
AT1G06950 (E=0.0) ATTIC110, TIC110 | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) (1003 aa)
     
   
  0.465
Bra027176
AT3G16290 (E=1e-252) EMB2083 | EMB2083 (embryo defective 2083); ATP binding / ATP-dependent peptidase/ ATPase/ metalloendopeptidase/ metallopeptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase (479 aa)
     
   
  0.464
Bra040201
AT3G04340 (E=0.0) emb2458 | emb2458 (embryo defective 2458); ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nucleotide binding (1296 aa)
     
   
  0.451
Bra024312
AT5G64580 (E=0.0) | AAA-type ATPase family protein (854 aa)
     
   
  0.436
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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