STRINGSTRING
Bra002426 protein (Brassica rapa) - STRING interaction network
"Bra002426" - AT5G22740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002426AT5G22740 (E=7e-312) ATCSLA02, CSLA02, ATCSLA2 | ATCSLA02; mannan synthase/ transferase, transferring glycosyl groups (969 aa)    
Predicted Functional Partners:
Bra026355
AT4G27370 (E=0.0) VIIIB, ATVIIIB | VIIIB; motor (1244 aa)
   
  0.694
Bra017025
AT2G40180 (E=1e-129) ATHPP2C5 | ATHPP2C5; catalytic/ protein serine/threonine phosphatase (564 aa)
   
 
  0.641
Bra041099
Uncharacterized protein (698 aa)
         
  0.629
Bra023631
AT5G17680 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1437 aa)
       
  0.583
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
         
  0.551
Bra030352
AT5G39320 (E=5e-015) | UDP-glucose 6-dehydrogenase, putative (72 aa)
       
  0.544
Bra028430
AT5G39320 (E=2e-276) | UDP-glucose 6-dehydrogenase, putative (480 aa)
       
  0.544
Bra028234
AT5G39320 (E=2e-276) | UDP-glucose 6-dehydrogenase, putative (480 aa)
       
  0.544
Bra026264
AT5G39320 (E=7e-135) | UDP-glucose 6-dehydrogenase, putative (247 aa)
       
  0.544
Bra025395
AT5G39320 (E=3e-037) | UDP-glucose 6-dehydrogenase, putative (95 aa)
       
  0.544
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (16%) [HD]