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Bra002427 protein (Brassica rapa) - STRING interaction network
"Bra002427" - AT5G22780 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002427AT5G22780 (E=0.0) | adaptin family protein (1007 aa)    
Predicted Functional Partners:
Bra027439
AT1G47830 (E=3e-075) | clathrin coat assembly protein, putative (154 aa)
     
  0.996
Bra015600
AT1G47830 (E=6e-076) | clathrin coat assembly protein, putative (157 aa)
     
  0.996
Bra025009
AT5G46630 (E=3e-242) | clathrin adaptor complexes medium subunit family protein (438 aa)
     
  0.994
Bra022052
AT5G46630 (E=4e-234) | clathrin adaptor complexes medium subunit family protein (438 aa)
     
  0.994
Bra017537
AT5G46630 (E=4e-244) | clathrin adaptor complexes medium subunit family protein (438 aa)
     
  0.994
Bra000742
AT4G11360 (E=1e-058) RHA1B | RHA1B; protein binding / zinc ion binding (308 aa)
     
  0.980
Bra006100
AT5G11490 (E=0.0) | adaptin family protein ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (840 aa)
     
  0.980
Bra031752
AT1G60780 (E=1e-237) HAP13 | HAP13 (HAPLESS 13); protein binding (424 aa)
     
  0.977
Bra031481
AT1G60780 (E=2e-242) HAP13 | HAP13 (HAPLESS 13); protein binding (428 aa)
     
  0.977
Bra019904
AT1G60780 (E=4e-240) HAP13 | HAP13 (HAPLESS 13); protein binding (428 aa)
     
  0.977
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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