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Bra002441 protein (Brassica rapa) - STRING interaction network
"Bra002441" - AT5G22920 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002441AT5G22920 (E=2e-165) | zinc finger (C3HC4-type RING finger) family protein (295 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
 
    0.804
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
 
    0.804
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
 
    0.804
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
         
  0.802
Bra009679
AT5G23395 (E=1e-049) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- CHCH (InterPro-IPR010625); Has 224 Blast hits to 224 proteins in 106 species- Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 94; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (161 aa)
       
 
  0.662
Bra021653
AT2G30600 (E=0.0) | BTB/POZ domain-containing protein (799 aa)
     
    0.604
Bra025107
AT5G44740 (E=1e-202) POLH | POLH (Y-FAMILT DNA POLYMERASE H); DNA-directed DNA polymerase (691 aa)
       
  0.562
Bra037393
AT4G01000 (E=1e-117) | ubiquitin family protein (419 aa)
     
    0.550
Bra036232
AT4G05230 (E=3e-060) | ubiquitin family protein (201 aa)
     
    0.550
Bra036231
AT4G05230 (E=1e-013) | ubiquitin family protein (444 aa)
     
    0.550
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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