STRINGSTRING
Bra002442 protein (Brassica rapa) - STRING interaction network
"Bra002442" - AT5G22940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002442AT5G22940 (E=1e-209) F8H | F8H (FRA8 HOMOLOG); catalytic (467 aa)    
Predicted Functional Partners:
Bra028787
AT5G04500 (E=0.0) | glycosyltransferase family protein 47 (717 aa)
         
  0.603
Bra009448
AT5G04500 (E=0.0) | glycosyltransferase family protein 47 (763 aa)
         
  0.603
Bra007194
AT3G55830 (E=5e-173) EPC1 | EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups (330 aa)
         
  0.603
Bra005218
AT2G37090 (E=2e-177) IRX9 | IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (347 aa)
           
  0.502
Bra022739
AT5G54690 (E=4e-266) GAUT12, LGT6, IRX8 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (534 aa)
           
  0.495
Bra002963
AT5G54690 (E=1e-277) GAUT12, LGT6, IRX8 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (535 aa)
           
  0.495
Bra012145
AT5G67230 (E=5e-193) | glycosyl transferase family 43 protein (472 aa)
           
  0.478
Bra010929
AT1G27600 (E=4e-167) | glycosyl transferase family 43 protein (388 aa)
           
  0.476
Bra030055
AT1G27600 (E=1e-167) | glycosyl transferase family 43 protein (385 aa)
           
  0.441
Bra025726
AT1G19300 (E=1e-167) GATL1, PARVUS, GLZ1 | PARVUS (PARVUS); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (352 aa)
           
  0.432
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]