STRINGSTRING
Bra002454 protein (Brassica rapa) - STRING interaction network
"Bra002454" - AT5G60760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002454AT5G60760 (E=0.0) | 2-phosphoglycerate kinase-related (725 aa)    
Predicted Functional Partners:
Bra012449
AT1G69360 (E=9e-213) | unknown protein (869 aa)
           
  0.541
Bra005384
AT2G34890 (E=1e-279) | CTP synthase, putative / UTP--ammonia ligase, putative ; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (621 aa)
           
  0.540
Bra016717
AT1G13940 (E=0.0) | unknown protein (919 aa)
           
  0.511
Bra004375
AT1G26620 (E=7e-162) | unknown protein (834 aa)
           
  0.511
Bra008529
AT4G00750 (E=0.0) | dehydration-responsive family protein (621 aa)
           
  0.505
Bra004796
AT2G43980 (E=9e-243) AtITPK4 | AtITPK4 (inositol 1,3,4-trisphosphate 5/6-kinase 4); ATP binding / catalytic/ inositol tetrakisphosphate 1-kinase/ inositol-1,3,4-trisphosphate 5/6-kinase/ magnesium ion binding (488 aa)
     
   
  0.484
Bra004933
AT2G45750 (E=0.0) | dehydration-responsive family protein (632 aa)
           
  0.483
Bra008597
AT5G16760 (E=6e-158) | inositol 1,3,4-trisphosphate 5/6-kinase (409 aa)
           
  0.475
Bra006368
AT5G16760 (E=7e-148) | inositol 1,3,4-trisphosphate 5/6-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 (322 aa)
           
  0.475
Bra026871
AT1G13940 (E=3e-147) | unknown protein (824 aa)
           
  0.428
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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