STRINGSTRING
Bra002458 protein (Brassica rapa) - STRING interaction network
"Bra002458" - AT5G60690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002458AT5G60690 (E=0.0) REV, IFL, IFL1 | REV (REVOLUTA); DNA binding / lipid binding / transcription factor (850 aa)    
Predicted Functional Partners:
Bra023570
AT5G16560 (E=3e-101) KAN, KAN1 | KAN (KANADI); transcription factor (398 aa)
           
  0.583
Bra008613
AT5G16560 (E=3e-106) KAN, KAN1 | KAN (KANADI); transcription factor (291 aa)
           
  0.583
Bra028532
AT3G52770 (E=5e-011) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (70 aa)
     
 
  0.581
Bra019649
AT3G52770 (E=2e-008) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (70 aa)
     
 
  0.581
Bra006946
AT3G52770 (E=5e-010) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (69 aa)
     
 
  0.581
Bra005284
AT3G52770 (E=6e-008) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (71 aa)
     
 
  0.581
Bra040322
AT2G45190 (E=8e-107) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (233 aa)
           
  0.541
Bra033844
AT1G32240 (E=6e-140) KAN2 | KAN2 (KANADI 2); DNA binding / transcription factor (392 aa)
           
  0.531
Bra023254
AT1G32240 (E=7e-109) KAN2 | KAN2 (KANADI 2); DNA binding / transcription factor (366 aa)
           
  0.531
Bra003309
AT2G45190 (E=4e-105) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (210 aa)
           
  0.521
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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