STRINGSTRING
Bra002459 protein (Brassica rapa) - STRING interaction network
"Bra002459" - AT5G60680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002459AT5G60680 (E=6e-061) | unknown protein (160 aa)    
Predicted Functional Partners:
Bra040144
AT3G04240 (E=0.0) SEC | SEC (secret agent); transferase, transferring glycosyl groups (975 aa)
           
  0.465
Bra035704
AT2G28380 (E=6e-163) DRB2 | DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding (433 aa)
           
  0.465
Bra034832
AT3G11540 (E=0.0) SPY | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (914 aa)
           
  0.465
Bra025523
AT5G41070 (E=3e-099) DRB5 | DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding (365 aa)
           
  0.465
Bra011953
AT2G28380 (E=6e-156) DRB2 | DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding (430 aa)
           
  0.465
Bra001408
AT3G11540 (E=0.0) SPY | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (900 aa)
           
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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