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Bra002460 protein (Brassica rapa) - STRING interaction network
"Bra002460" - AT5G60670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002460AT5G60670 (E=8e-088) | 60S ribosomal protein L12 (RPL12C) (166 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
  0.999
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
   
  0.999
Bra007151
AT3G55290 (E=2e-127) | short-chain dehydrogenase/reductase (SDR) family protein (448 aa)
   
  0.999
Bra034356
AT1G08310 (E=7e-134) | esterase/lipase/thioesterase family protein (641 aa)
   
  0.999
Bra020193
AT5G22440 (E=7e-094) | 60S ribosomal protein L10A (RPL10aC) (197 aa)
   
  0.999
Bra018631
AT2G27530 (E=9e-089) PGY1 | PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome (226 aa)
   
  0.999
Bra012012
AT2G27530 (E=2e-098) PGY1 | PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome (211 aa)
   
  0.999
Bra006626
AT5G22450 (E=0.0) | unknown protein (1306 aa)
   
  0.999
Bra002411
AT5G22440 (E=1e-100) | 60S ribosomal protein L10A (RPL10aC) (212 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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