STRINGSTRING
Bra002466 protein (Brassica rapa) - STRING interaction network
"Bra002466" - AT5G60630 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002466AT5G60630 (E=6e-007) | unknown protein (107 aa)    
Predicted Functional Partners:
Bra027908
AT1G57770 (E=1e-288) | amine oxidase family (585 aa)
           
  0.465
Bra039477
AT3G04960 (E=3e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G27980.1); Has 17810 Blast hits to 12112 proteins in 728 species- Archae - 198; Bacteria - 1231; Metazoa - 8565; Fungi - 1136; Plants - 665; Viruses - 38; Other Eukaryotes - 5977 (source- NCBI BLink). (538 aa)
           
  0.418
Bra039461
AT3G04960 (E=2e-066) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G27980.1); Has 17810 Blast hits to 12112 proteins in 728 species- Archae - 198; Bacteria - 1231; Metazoa - 8565; Fungi - 1136; Plants - 665; Viruses - 38; Other Eukaryotes - 5977 (source- NCBI BLink). (533 aa)
           
  0.418
Bra026081
AT1G16070 (E=1e-195) AtTLP8 | AtTLP8 (TUBBY LIKE PROTEIN 8); transcription factor (389 aa)
           
  0.408
Bra009543
AT5G03230 (E=3e-057) | unknown protein (176 aa)
           
  0.406
Bra009497
AT5G03970 (E=1e-156) | F-box family protein (406 aa)
           
  0.406
Bra007798
AT2G25460 (E=7e-178) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- male gametophyte, root, carpel, stamen; EXPRESSED DURING- M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s- C2 calcium-dependent membrane targeting (InterPro-IPR000008); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G04860.1); Has 53 Blast hits to 36 proteins in 5 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (537 aa)
           
  0.406
Bra005738
AT5G03230 (E=8e-059) | unknown protein (178 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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