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Bra002472 protein (Brassica rapa) - STRING interaction network
"Bra002472" - AT5G60550 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002472AT5G60550 (E=5e-196) GRIK2, ATSNAK1 | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2); kinase (413 aa)    
Predicted Functional Partners:
Bra031654
AT1G09020 (E=8e-252) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (488 aa)
     
  0.996
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
     
  0.996
Bra018586
AT1G09020 (E=2e-119) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (439 aa)
     
  0.996
Bra005765
AT5G03455 (E=5e-074) CDC25, ARATH;CDC25, ACR2 | CDC25; arsenate reductase/ protein tyrosine phosphatase (144 aa)
       
 
  0.894
Bra033449
AT3G52180 (E=2e-165) ATPTPKIS1, DSP4, SEX4 | SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase (552 aa)
     
  0.892
Bra006908
AT3G52180 (E=8e-142) ATPTPKIS1, DSP4, SEX4 | SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase (353 aa)
     
  0.889
Bra040572
AT4G16360 (E=1e-127) | AMP-activated protein kinase (291 aa)
     
  0.832
Bra025642
AT5G39790 (E=7e-108) | 5’-AMP-activated protein kinase beta-1 subunit-related (276 aa)
     
  0.832
Bra020154
AT5G21170 (E=1e-119) | 5’-AMP-activated protein kinase beta-2 subunit, putative (279 aa)
     
  0.832
Bra012725
AT4G16360 (E=2e-128) | AMP-activated protein kinase (285 aa)
     
  0.832
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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