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Bra002475 protein (Brassica rapa) - STRING interaction network
"Bra002475" - AT5G60520 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002475AT5G60520 (E=1e-153) | late embryogenesis abundant protein-related / LEA protein-related (332 aa)    
Predicted Functional Partners:
Bra035161
AT1G80690 (E=3e-113) | unknown protein (228 aa)
           
  0.604
Bra003580
AT1G80690 (E=1e-097) | unknown protein (228 aa)
           
  0.570
Bra032687
AT4G13050 (E=6e-177) | acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative (366 aa)
           
  0.479
Bra032654
AT1G01910 (E=3e-184) | anion-transporting ATPase, putative ; ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail- anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane prote [...] (352 aa)
           
  0.416
Bra020233
AT5G60730 (E=1e-085) | anion-transporting ATPase family protein (366 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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