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Bra002479 protein (Brassica rapa) - STRING interaction network
"Bra002479" - AT5G60450 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002479AT5G60450 (E=0.0) ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (758 aa)    
Predicted Functional Partners:
ARF5-1
AT1G19850 (E=0.0) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (867 aa)
       
 
0.998
Bra010776
AT1G30330 (E=3e-247) ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (832 aa)
       
 
0.998
Bra031850
AT5G65670 (E=5e-082) IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (292 aa)
       
 
  0.998
Bra030219
AT2G22670 (E=1e-083) IAA8 | IAA8; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (266 aa)
       
 
  0.998
Bra024898
AT2G01200 (E=9e-068) IAA32 | IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (167 aa)
       
 
  0.998
Bra035185
AT1G80390 (E=5e-065) IAA15 | IAA15 (INDOLE-3-ACETIC ACID INDUCIBLE 15); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (188 aa)
       
 
  0.998
ARF10
AT2G28350 (E=0.0) ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (705 aa)
       
 
0.998
Bra026166
AT1G15050 (E=5e-045) IAA34 | IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (164 aa)
       
 
  0.998
Bra015326
AT1G04550 (E=1e-084) IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (235 aa)
       
 
  0.998
Bra011082
AT4G29080 (E=7e-082) PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (290 aa)
       
 
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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