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Bra002485 protein (Brassica rapa) - STRING interaction network
"Bra002485" - AT5G60360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002485AT5G60360 (E=1e-190) SAG2, AALP | AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase (359 aa)    
Predicted Functional Partners:
Bra028535
AT3G52850 (E=0.0) VSR1, BP-80, ATELP, VSR-1, BP80, BP80B, ATELP1, ATVSR1 | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1); amino-terminal vacuolar sorting propeptide binding (625 aa)
       
 
  0.819
Bra006952
AT3G52850 (E=2e-292) VSR1, BP-80, ATELP, VSR-1, BP80, BP80B, ATELP1, ATVSR1 | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1); amino-terminal vacuolar sorting propeptide binding (639 aa)
       
 
  0.819
Bra031790
AT1G11910 (E=4e-272) | aspartyl protease family protein (615 aa)
     
  0.763
Bra013121
AT2G14740 (E=0.0) ATVSR3 | ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3); calcium ion binding (631 aa)
       
 
  0.761
Bra019727
AT1G62390 (E=4e-268) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (851 aa)
     
  0.759
Bra041109
AT1G62290 (E=8e-057) | aspartyl protease family protein (177 aa)
     
  0.757
Bra040597
AT3G02740 (E=8e-229) | aspartyl protease family protein (489 aa)
     
  0.757
Bra040466
AT1G65240 (E=1e-229) | aspartyl protease family protein (472 aa)
     
  0.757
Bra040343
AT1G77480 (E=4e-033) | nucellin protein, putative (83 aa)
     
  0.757
Bra039497
AT5G36260 (E=8e-157) | aspartyl protease family protein (491 aa)
     
  0.757
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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