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Bra002487 protein (Brassica rapa) - STRING interaction network
"Bra002487" - AT5G60340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002487AT5G60340 (E=3e-049) | maoC-like dehydratase domain-containing protein ; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity (178 aa)    
Predicted Functional Partners:
Bra034833
AT3G11510 (E=4e-063) | 40S ribosomal protein S14 (RPS14B) (150 aa)
     
 
  0.942
Bra005296
AT3G11510 (E=3e-063) | 40S ribosomal protein S14 (RPS14B) (150 aa)
     
 
  0.942
Bra017258
AT2G36145 (E=3e-070) | unknown protein (338 aa)
     
 
  0.942
Bra009165.1-P
AT3G11510 (E=3e-063) | 40S ribosomal protein S14 (RPS14B) (150 aa)
     
 
  0.942
Bra006934
AT3G52570 (E=2e-081) | ATP binding (498 aa)
     
 
  0.942
Bra005296.1-P
AT3G11510 (E=3e-063) | 40S ribosomal protein S14 (RPS14B) (150 aa)
     
 
  0.942
Bra002045
AT3G11510 (E=2e-062) | 40S ribosomal protein S14 (RPS14B) (162 aa)
     
 
  0.942
Bra001406
AT3G11510 (E=3e-062) | 40S ribosomal protein S14 (RPS14B) (150 aa)
     
 
  0.942
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
     
 
  0.911
Bra023208
AT1G31817 (E=6e-111) NFD3 | NFD3 (NUCLEAR FUSION DEFECTIVE 3); structural constituent of ribosome (309 aa)
     
 
  0.906
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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