STRINGSTRING
Bra002501 protein (Brassica rapa) - STRING interaction network
"Bra002501" - AT5G60250 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002501AT5G60250 (E=2e-193) | zinc finger (C3HC4-type RING finger) family protein (670 aa)    
Predicted Functional Partners:
Bra015460
AT1G05880 (E=3e-118) | nucleic acid binding / protein binding / structural molecule/ zinc ion binding (520 aa)
           
  0.478
Bra038659
AT5G63750 (E=2e-136) | IBR domain-containing protein (501 aa)
           
  0.465
Bra009332
AT5G08240 (E=6e-087) | unknown protein (261 aa)
           
  0.406
Bra007560
AT3G60780 (E=4e-099) | unknown protein (217 aa)
           
  0.406
Bra007557
AT3G60780 (E=3e-102) | unknown protein (219 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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