STRINGSTRING
Bra002503 protein (Brassica rapa) - STRING interaction network
"Bra002503" - AT5G60210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002503AT5G60210 (E=4e-192) | LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; BEST Arabidopsis thaliana protein match is- myosin heavy chain-related (TAIR-AT2G37080.1); Has 77946 Blast hits to 39215 proteins in 1793 species- Archae - 845; Bacteria - 8877; Metazoa - 39997; Fungi - 6049; Plants - 2988; Viruses - 248; Other Eukaryotes - 18942 (source- NCBI BLink). (878 aa)    
Predicted Functional Partners:
Bra014631
AT3G57360 (E=5e-057) | unknown protein (242 aa)
       
  0.948
Bra007322
AT3G57360 (E=2e-113) | unknown protein (254 aa)
       
  0.948
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
              0.557
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
              0.557
Bra025613
AT5G35410 (E=4e-233) SOS2, SnRK3.11, CIPK24 | SOS2 (SALT OVERLY SENSITIVE 2); kinase/ protein kinase (453 aa)
       
      0.522
Bra040132
AT3G04600 (E=3e-205) | tRNA synthetase class I (W and Y) family protein (401 aa)
         
  0.464
Bra040117
AT3G05040 (E=6e-212) HST, HST1 | HST (HASTY); nucleocytoplasmic transporter (1500 aa)
         
  0.464
Bra034277
AT2G25840 (E=1e-168) OVA4 | OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase (395 aa)
         
  0.464
Bra029108
AT2G25840 (E=1e-159) OVA4 | OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase (411 aa)
         
  0.464
Bra028092
AT3G04600 (E=3e-177) | tRNA synthetase class I (W and Y) family protein (441 aa)
         
  0.464
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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