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Bra002514 protein (Brassica rapa) - STRING interaction network
"Bra002514" - AT2G19930 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002514AT2G19930 (E=0.0) | RNA-dependent RNA polymerase family protein (986 aa)    
Predicted Functional Partners:
Bra033293
AT1G01040 (E=0.0) DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (1846 aa)
     
 
  0.788
Bra031999
AT3G03300 (E=0.0) DCL2, ATDCL2 | DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III (1277 aa)
     
 
  0.788
Bra002293
AT5G20320 (E=0.0) DCL4, ATDCL4 | DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III (1641 aa)
     
 
  0.788
Bra009695
AT5G23570 (E=2e-213) SGS3, ATSGS3 | SGS3 (SUPPRESSOR OF GENE SILENCING 3) (606 aa)
       
 
  0.689
Bra039552
AT4G15417 (E=5e-079) ATRTL1 | ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding / ribonuclease III (283 aa)
     
 
  0.554
Bra038084
AT4G15420 (E=3e-280) | PRLI-interacting factor K (560 aa)
     
 
  0.554
Bra035784
AT3G20420 (E=5e-132) RTL2, ATRTL2 | RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III (335 aa)
     
 
  0.554
Bra031998
AT3G03305 (E=0.0) | calcineurin-like phosphoesterase family protein (1200 aa)
     
 
  0.554
Bra019456
AT3G43920 (E=0.0) DCL3, ATDCL3 | ribonuclease III family protein (1447 aa)
     
 
  0.554
Bra012789
AT4G15417 (E=2e-084) ATRTL1 | ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding / ribonuclease III (284 aa)
     
 
  0.554
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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